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EchinoDB, an application for comparative transcriptomics of deeply-sampled clades of echinoderms
Title
EchinoDB, an application for comparative transcriptomics of deeply-sampled clades of echinoderms
Author
Janies, Daniel, Witter, Zachary, Linchangco, Gregorio V., Jr.
Date Created
2016
Subjects--Topical
Genomics, Biology
Description
Background: One of our goals for the echinoderm tree of life project (http://echinotol.org) is to identify orthologs suitable for phylogenetic analysis from next-generation transcriptome data. The current dataset is the largest assembled for echin...
Phylogeny of echinoderm hemoglobins
Title
Phylogeny of echinoderm hemoglobins
Author
Janies, Daniel, Linchangco, Gregorio V., Jr.
Date Created
2015
Subjects--Topical
Genomics, Biology
Description
Background Recent genomic information has revealed that neuroglobin and cytoglobin are the two principal lineages of vertebrate hemoglobins, with the latter encompassing the familiar myoglobin and alpha-globin/beta-globin tetramer hemoglobin, and ...
Phylotranscriptomic analysis uncovers a wealth of tissue inhibitor of metalloproteinases variants in echinoderms
Title
Phylotranscriptomic analysis uncovers a wealth of tissue inhibitor of metalloproteinases variants in echinoderms
Author
Janies, Daniel, Clouse, Ronald M., Linchangco, Gregorio V., Jr.
Date Created
2015
Subjects--Topical
Genomics, Biology
Description
Tissue inhibitors of metalloproteinases (TIMPs) help regulate the extracellular matrix (ECM) in animals, mostly by inhibiting matrix metalloproteinases (MMPs). They are important activators of mutable collagenous tissue (MCT), which have been exte...